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yteR [2018-07-17 19:20:05]
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yteR [2018-07-17 19:20:05]

galacturonyl hydrolase, catalyses intracellular degradation of disaccharides generated by YesX
locus
BSU30120
pI
5.87
mw
42.81 kDa
protein length
373 aa Sequence Blast
gene length
1119 bp Sequence Blast
function
intracellular degradation of disaccharides generated by YesX
product
galacturonyl hydrolase, catalyses intracellular degradation of disaccharides generated by YesX
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 2|Metabolism] → [category|SW 2.2|Carbon metabolism] → [category|SW 2.2.2|Utilization of specific carbon sources] → [category|SW 2.2.2.26|Utilization of pectin]

    • Gene

    Coordinates
    3,081,131 → 3,082,243

    The protein

    Protein family

  • glycosyl hydrolase 105 family (according to Swiss-Prot)

    • Structure

  • [PDB|2GH4], [PDB|2D8L] (complex with D-GlcA-Gal-nc)

    • Expression and Regulation

    Operons

    genes
    [gene|4ED1DD17694A06CFDFF48943BAE8AEC2CCCB0401|yteP]-[gene|40787292458E5C6676F9F4F6F34C0D6BD5313DE1|yteR]-[gene|1482FD92CB6DC966263F08AD109769728FC708E4|yteS]-[gene|484D17480DFAD3667E0EBC6D38854A7546A8DB46|yteT]-[gene|103A912E971E5760DBA45CC0681D77CED61D1FED|yteU]-[gene|FCAE9513D764B7A9AAB9C59E6CE1D65C400D4B44|yteV]
    description
    [Pubmed|22383849]
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    Biological materials

    Mutant

  • MGNA-A811 (yteR::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/811 NBRP B. subtilis, Japan]
  • BKE30120 (Δ[gene|40787292458E5C6676F9F4F6F34C0D6BD5313DE1|yteR]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE30120 BGSC], [Pubmed|28189581], upstream reverse: _UP1_TTGATCCATTGATCCCATCC, downstream forward: _UP4_CCTCTTTTTAGGTCAGCGGG
  • BKK30120 (Δ[gene|40787292458E5C6676F9F4F6F34C0D6BD5313DE1|yteR]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK30120 BGSC], [Pubmed|28189581], upstream reverse: _UP1_TTGATCCATTGATCCCATCC, downstream forward: _UP4_CCTCTTTTTAGGTCAGCGGG

    • References

  • 12884008,16870154,16781735,17449691